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Fighting cancer with mathematics

At Massachusetts General Hospital (MGH) in Boston, the doctors administering proton therapy to cancer patients are striving for more effective ways of drawing up treatment plans. For help, they are looking to mathematics in a new approach called multicriteria treatment planning. In this short film, Physics World visits the MGH to meet the researchers and doctors who are pioneering this new initiative.

Glass-blowing at the nanoscale

By James Dacey

From the Romans to the studio artists of today, glass blowing is as much an art form as it is a technical discipline. In the same spirit as this creative lineage, a group of researchers in Switzerland has invented a technique for creating nano-sized capillary tubes of bespoke sizes.

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The joke’s on Chu

Steven Chu

By Michael Banks

With Steven Chu nearing towards his final days in office as US energy secretary we couldn’t help but highlight a recent spoof of the Nobel laureate in the satirical The Onion magazine.

The Onion may have recently duped China’s People’s Daily newspaper into thinking that North Korea’s leader had been voted the sexiest man alive in 2012, but the magazine failed to fool people that the spoof of Chu was true.

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Why water prefers the single life

The idea that liquid water can exist in two different forms has been controversial since it was first raised more than 20 years ago. But now the existence of the “liquid–liquid phase transition” in water has been emphatically challenged by two researchers at the University of California at Berkeley, who say that their extensive search for it in computer simulations has revealed no such thing. Instead, they say, the earlier claims stemmed from the common problem of interpreting simulations before they have reached their equilibrium state.

The possibility that liquid water has two different phases dates back to 1992 when Gene Stanley at Boston University and colleagues investigated the metastable region of deeply supercooled water. Using computer simulations rather than experiments, which are hard to do as the water tends to freeze to ice, Stanley and colleagues found that below about –75 °C and at pressures of several thousand atmospheres, metastable liquid water can spontaneously separate into two forms. The phase boundary between them ends in a critical point, where the two types of water become indistinguishable.

Order in chaos?

The idea that a liquid – essentially a dense jumble of disordered molecules – could have two different forms was surprising as it is hard to see how there can be two distinct kinds of disorder. Water molecules, however, are different, as they link into a constantly changing 3D network via hydrogen bonds. Each molecule has (on average) four near neighbours in a tetrahedral arrangement, making the local structure of the liquid relatively orderly. However, the hydrogen bonds tend to hold the molecules “at arm’s length”, keeping them further apart than they would otherwise be. In ice this creates a rather open crystal structure, but in liquid water many of the hydrogen bonds are deformed or broken, allowing the molecules to come closer.

Stanley and colleagues saw the liquid–liquid transition as a reflection of two opposing tendencies: on the one hand, the molecules want to maintain a fairly open structure through hydrogen bonding, but on the other hand they achieve denser, random packing when bonds are broken. One of the putative metastable forms of water was therefore a “low-density liquid” (LDL) and the other a “high-density liquid” (HDL).

Our calculations are completely inconsistent with David Chandler’s – we clearly see two, not one, liquid phases
Pablo Debenedetti, Princeton University

Several other liquid–liquid transitions have also since been found, both in simulations and in some experiments in liquids that have a similar tetrahedral coordination to water, such as silicon and phosphorus. Indeed, Stanley has suggested that many of water’s famous anomalies – for example, the fact that its density peaks at 4 °C – are an echo of the two distinct liquid phases far inside the metastable region.

No distinctions

But now David Limmer and David Chandler at Berkeley claim their computer simulations show only one liquid phase in the metastable region, which eventually freezes to ice. Their suggestion has been provoking vigorous debate ever since their first paper on the matter was published in 2011. The new work is more exhaustive, but still finds no evidence for the liquid–liquid state.

So why have others seen the transition? Limmer and Chandler say that, in a simulation, it is not enough to wait for the density of the system to settle down to a steady state, which might be taken as a sign that the system has reached its equilibrium state. They say one needs to wait long enough for equilibration of a second parameter, which distinguishes an amorphous phase from a crystalline one. But the latter, they say, can take thousands of times longer to equilibrate than the density because it involves the reorientation of large domains during the transition from liquid to ice.

“On the way to crystallization, [the second parameter] changes imperceptibly on a timescale where the density will fluctuate many times between the higher-density liquid and the lower-density partially formed crystal,” Chandler explains. “The error others have made has been in thinking that those density fluctuations represent transitions between distinct liquid phases.” Stanley, though, is not persuaded. “All simulations of realistic water potentials are consistent with the liquid–liquid transition hypothesis,” he says.

Vigorous debate

Pablo Debenedetti, a chemical physicist at Princeton University, New Jersey, also remains convinced that the liquid–liquid transition is real, and has recently reported simulations showing the two liquid phases using one of the same water potentials for which Limmer and Chandler report only a single phase. Stanley thinks that the Berkeley duo looked only outside the region of the phase diagram where the two liquids are metastable. Chandler, however, denies this claim. “Of course we look in the same regions of phase space,” he says.

Debenedetti presented further results favouring the transition at the American Physical Society meeting in Baltimore last week. “I provided clear computational evidence of two coexisting metastable liquid phases and a stable crystal, all at the same temperature and pressure,” he says. “Our calculations are completely inconsistent with David Chandler’s – we clearly see two, not one, liquid phases.”

Stanley also points out that “liquid–liquid transitions are unambiguously present in systems other than water.” But while Chandler agrees that “the transition for phosphorus appears to be the real thing, and I believe liquid sulphur does something similar,” he also says that “this phenomenon is nothing like the putative liquid–liquid transition in water, which cannot be directly observed.”

At this point the argument seems to be approaching stalemate. “There is clearly need for an independent assessment of this topic,” says Chandler.

Venus’ vicious vortex revealed

By James Dacey

The southern polar vortex of Venus

The planet Venus may be named after the Roman god of love and beauty, but from what we know about our neighbouring planet, it appears to specialize in a particularly fiery sort of romance. It has a surface dominated by volcanism, and an atmosphere roiled by a runaway greenhouse effect, where sulphuric acid rains down amid a blitzkrieg of lightning strikes. It makes me think that the miserable sort of weather we’ve being experiencing in the UK of late is perhaps not so bad after all.

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Earth is closer to the edge of Sun’s habitable zone

The Earth could be closer than previously thought to the inner edge of the Sun’s habitable zone, according to a new study by planetary scientists in the US and France. The research also suggests that if our planet moved out of the habitable zone, it could lead to a “moist greenhouse” climate that could kick-start further drastic changes to the atmosphere.

A star’s habitable zone is the set of orbits within which a planet could have liquid water on its surface – and being within this zone is considered to be an important prerequisite for the development of life.

The current consensus is that the Sun’s habitable zone begins at about 0.95 astronomical units (AU), a comfortable distance from the Earth’s orbit at 1 AU. However, this latest work by James Kasting and colleagues at Penn State University, NASA and the University of Bordeaux suggests that that inner edge of the zone is much further out at 0.99 AU.

Lost oceans

“Our new climate model predicts that we are closer to the moist-greenhouse scenario than we had thought,” says Kasting. In this scenario, the stratosphere becomes wet and fully saturated as the Earth’s surface warms. This results in the dissociation of water molecules and the release of hydrogen into space. Depending on the levels of atmospheric saturation, the oceans would be completely lost over timescales as long as several billion years. This, say the scientists, would result in our climate changing to resemble a Venus-styled runaway greenhouse.

Penn State’s Ramses Ramirez points out that the atmosphere currently has an average surface relative humidity of 77%, which gradually decreases to 10% or less above an altitude of 10 km – so the atmosphere is far from fully saturated. However, there are two ways that the Earth’s atmosphere could move in that direction.

Slipping over the edge

One is that the Earth’s orbit changes and it slips across the 0.99 AU inner edge. The second is that the Earth remains at 1 AU but rising temperatures caused by greenhouse gases such as water vapour and carbon dioxide lead to a moist greenhouse. Indeed, the researchers are now calculating how much carbon dioxide would be needed for the second scenario to occur.

Scientists believe that a moist greenhouse would begin when the global average temperature reaches 340 K – whereas the current average is 288 K. Kasting says that under really pessimistic assumptions – a 10-fold to 20-fold increase in atmospheric carbon dioxide – it could be possible for the average temperature to reach 340 K. However, he points out that even if humans continue to burn fossil fuels at a very high rate, a catastrophic moist greenhouse would not kick in until at least 2300.

Other researchers, however, point out that the Earth has been much hotter in the past and such a transition did not occur. Dorian Abbot, a climate scientist at the University of Chicago, points out that average temperatures were about 10–15 K warmer during the Cretaceous period. “As far as we know, Earth has never been in a moist-greenhouse state,” says Abbot. “We certainly did not lose our entire oceans.”

Signatures of moist greenhouse by 2100?

Ravi Kopparapu at Penn State says that if current IPCC temperature projections of a 4 K increase by the end of this century are correct – which assumes a rapidly growing and fossil-fuel intensive global economy – our descendants could start seeing the signatures of a moist greenhouse by 2100.

Kopparapu argues that once the atmosphere makes the transition to a moist greenhouse, the only option would be global geoengineering to reverse the process. In such a moist-greenhouse scenario, not only are the ozone layers and ice caps destroyed, but the oceans would begin evaporating into the atmosphere’s upper stratosphere.

Ramirez admits that there are two major caveats associated with the work. The first is the assumption that the modelled atmospheres are already fully saturated. This means that the atmosphere holds as much water vapour as it possibly can at a given temperature. The second is that the models do not incorporate cloud feedback, which could be important.

“Sobering” results

Despite these caveats, Kasting still thinks that the results are sobering. “If you are this close to [the] inner edge of the habitable zone, it is not as difficult to push yourself over…[and] that is catastrophic,” he says.

However, Colin Goldblatt, a planetary scientist at the University of Victoria in Canada, cautions against taking the concept of a habitable zone too literally. “I can put a planet at 0.9 AU and that planet will be perfectly habitable,” says Goldblatt. “It might not be where Kasting would like to retire, but things will live there.”

The research is described in The Astrophysical Journal.

Listen to our latest podcast about quantum computing

By Hamish Johnston

One of the most enjoyable parts of my job is speaking to physicists about their research. A while ago I had the pleasure of talking to five physicists who are passionate about quantum computing. Four are academics: John Martinis of the University of California, Santa Barbara; Raymond Laflamme of the University of Waterloo in Canada; John Preskill of the California Institute of Technology; and Charles Marcus of the Niels Bohr Institute in Denmark. The fifth physicist is Geordie Rose, who is the co-founder of a company that says it has built a quantum computer.

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Voyager 1, where art thou?

By Tushna Commissariat

It’s a running joke at the Physics World news desk – the exact location of the Voyager 1 probe and how often we end up writing about how it really has nearly left the solar system this time. So we decided to wait and watch when the news broke on Wednesday evening this week that the probe had left the solar system for sure (again).

Unsurprisingly, the next morning our inboxes included a slightly sheepish “status update” message from NASA. “The Voyager team is aware of reports today that NASA’s Voyager 1 has left the solar system,” says Edward Stone, Voyager project scientist based at the California Institute of Technology, Pasadena. “It is the consensus of the Voyager science team that Voyager 1 has not yet left the solar system or reached interstellar space. In December 2012 the Voyager science team reported that Voyager 1 is within a new region called ‘the magnetic highway’ where energetic particles changed dramatically. A change in the direction of the magnetic field is the last critical indicator of reaching interstellar space, and that change of direction has not yet been observed.”

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Surround no sound?

By Tushna Commissariat

Invisibility cloaks seem to fascinate scientists and the public in equal measure, and every few months a novel design for some sort of metamaterial that cloaks either light or sound catches our eye, if you excuse the pun.

This week, we came across a group of researchers in Spain that claims to have designed, fabricated and tested the first “directional 3D acoustic cloak” that works for airborne sound. Previous designs of acoustic cloak work in water and air, but only if the sound propagates in 2D. Also, many cloaks only work within a narrow band of frequencies, limiting their uses.

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Intense terahertz pulses cause DNA damage and repair

Short yet powerful bursts of terahertz radiation can damage DNA and also increase the production of proteins that help the cells to repair this damage. That is the conclusion of physicists and biologists in Canada, who have studied how the electromagnetic radiation interacts with human skin cells. The discovery could lead to the development of new medical therapies that make use of terahertz radiation.

Electromagnetic radiation in the terahertz frequency range – usually defined as 0.3–3 × 1012 Hz – shows great promise for security and medical-imaging applications. This is because it can pass through clothing and penetrate skin but is not ionizing like X-rays. As a result, low-intensity terahertz pulses are believed to be harmless to living organisms.

Vibrational modes

However, biophysicists have known for some time that double-stranded DNA has vibrational modes at terahertz frequencies. “In fact, these modes play an important role in local helix melting, or the separation of base pairs, which is necessary for the biological process of transcription to occur,” explains Lyubov Titova of the University of Alberta, who did this latest research with colleagues there and at the University of Lethbridge. Recent theoretical work suggests that externally applied terahertz radiation can couple to these modes and amplify them. Now, Titova and colleagues have found evidence that intense, picosecond-duration pulses of terahertz radiation can actually cause DNA strands to break in human skin cells.

The team created terahertz pulses by firing infrared laser pulses at a non-linear lithium–niobate crystal. The resulting pulses last about a picosecond and peaked at a frequency of 0.5 THz with a bandwidth of 0.1–2 THz. Each terahertz pulse has an energy of about 0.1–1.0 µJ, which is at least 10 million times greater than the energy of the terahertz pulses used in medical-imaging applications.

Damage and repair

The pulses were fired at samples of artificial human skin tissue that are able to undergo cell division and are metabolically active. DNA damage was detected by looking for a chemical marker called phosphorylated histone H2AX, which is formed when DNA strands are broken. This marker was seen in skin samples exposed to the terahertz pulses, along with increases in the levels of multiple-tumour suppressor and cell-cycle regulatory proteins that are involved in DNA repair. These observations could mean that damage done by the picosecond terahertz pulses is quickly and efficiently repaired – minimizing the risk of cancer being caused.

The study did not consider the effects of long-term exposure to such pulses – the skin samples were analysed 30 minutes after exposure. The team now plans to study how the effects change over time after exposure. “[This] should allow us to establish how quickly any induced damage is repaired,” explains Titova.

Potential medical applications

The team also plans to look at the potential therapeutic uses of intense terahertz pulses – with the hope that such pulses could become a new tool in the fight against cancer. “Any agent that causes DNA damage has potential applications in cancer therapy,” explains Titova. The team is now planning to study how intense terahertz pulses impact cancerous cells.

In addition to understanding the biological effects of the pulses, compact and inexpensive sources of intense pulsed terahertz radiation would have to be developed for use in hospitals. While such systems are currently not available, Titova says that terahertz technology is “developing by leaps and bounds, and such sources will probably be available in the near future”.

The research is described in Biomedical Optics Express.

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