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Skin cells ruffle to heal open wounds

Skin cells migrating to heal a wound have been observed in fine detail thanks to a novel form of microscopy developed by physicists in Taiwan. The method involves tracking tiny waves rippling along the surface of moving cells and the researchers say that their findings could help to identify the structures that enable cells to move.

There are many biological processes – including the spreading of cancer – that involve individual cells moving on their own accord. In one common form of this “motility”, a cell extends one or more feelers that can stick to their surroundings and pull the main cell body along.

Stretchy skin

Skin cells surrounding an open wound release a number of bio-factors that create a chemical gradient towards the exposed region. Sensing these chemicals, cells including “fibroblasts” extend a part of their bodies, called protruding edges, towards the open region.

Due to the relatively high concentration of motor proteins called myosin in the central region of these protrusions, the structures tend to stretch at a varying rate along their length. In many cases, this causes the protrusions to fold up at their edges triggering a surface wave known as an “edge ruffle”.

Various research groups have observed these waves as they propagate backwards from the edge of a migrating skin cell. However, the physical details of these waves are still poorly understood, not least because the amplitudes are of the order 100 nm, the wavelengths are just a few microns and cell membranes are almost transparent when isolated in a suitable culture. In addition, any measurement must be carried out very carefully to avoid perturbing the motion of membranes.

Membrane waves

In this latest work, a group of researchers led by Chau-Hwang Lee of Academia Sinica in Taiwan has quantified the membrane waves for the first time using a microscopy technique that they developed back in 2002. Reflecting intense light off a skin cell sample grown on a glass slide, the researchers track the evolution of a skin cell through slight variations in the intensity of light in a process they call “non-interferometric wide-field optical profilometry”.

Taking measurements on 23 human fibroblast cells, the researchers recorded membrane waves with amplitudes up to 300 nm. The varying acceleration was also observed as the waves speed up from 10 nm s–1 at the edges to 25 nm s–1 after 20 µm. These results confirmed a simple model put forward by a separate group of researchers two years ago.

“Cell migration is important in many aspects, from wound healing to cancer metastasis,” said Chau-Hwang Lee, a member of the research team. “Because membrane waves are significant features of cell motility, biologists may want to use them as a signature to understand the motility of specific cells.”

‘Cute’ technique

Stephen Curry, a biophysicist at Imperial College, London is impressed by the optical ingenuity of the new experiment. “It looks like quite a cute optical technique because they can measure variations in the topography of the upper surface of the cell which are shorter than the wavelength of the light used to illuminate the sample.”

Curry cautions, however, that there are limitations of using skin isolated from the body. “While such cells, grown on glass slides, provide a good model system for looking at some aspects of cell behaviour, it is difficult to transfer observations to inferences about wound healing in real human beings.”

Lee told physicsworld.com that he and his colleagues intend to create a more realistic testing ground by repeating the observations for skin cells isolated in a cell-culture chip. He also intends to work with theorists to develop a more accurate quantitative description.

This research will be published in Physical Review Letters.

Dirac biographer shortlisted for book prize

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The cover of Graham Farmelo’s biography of Paul Dirac

By Matin Durrani

“Moving, funny, sad and intensely readable, this is a fascinating insight into the psychology of genius.”

No, not a description of this blog entry, but what the judges of the Costa Book Awards had to say about Graham Farmelo’s biography of Paul Dirac, published earlier this year.

The judges have shortlisted his book, entitled The Strangest Man: The Hidden Life of Paul Dirac, Quantum Genius, for the 2009 Costa Biography Award.

As physicists, we’re biased, of course, and so are hoping Graham beats off the other contenders.

(For the record, they are a description by the late playwright Simon Gray of his battle with cancer, a biography by the author William Fiennes of his brother Richard, and a biography of Lucie de la Tour du Pin. No I’ve not heard of her either, but she lived in France at the turn of the 19th century and was, apparently, “the Pepys of her generation”.)

Graham’s shortlisting — announced last night on the BBC Radio 4 show Front Row — is a great opportunity for me to give you a final reminder that he is presenting the inaugural webinar in the physicsworld.com online lecture series tomorrow, Thursday 26 November 2009, at 4p.m. UK time. Graham will be describing Dirac’s life story and outlining his key scientific contributions.

(Profuse apologies again to anyone in the US for the clash with Thanksgiving, but we’re hoping you can log on while popping the turkey in the oven.)

The webinar is free and you can register for the event via this link

Graham was pretty chuffed about the shortlisting. “I’m thrilled,” he e-mailed me today. “I always wanted the book to be read not only by physicists but by people who enjoy biographies. The wonderful thing about prizes like this is that they bring books to new audiences.”

Let’s hope he wins.

First neutrinos for Japanese lab

Physicists at the Tokai-to-Kamioka (T2K) in Japan are celebrating the first detection of neutrinos in what is set to be one of the world’s largest facilities for studying these subatomic particles.

The researchers successfully fired a beam of neutrinos from the 50 GeV synchrotron at the $1.5bn Japan Proton Accelerator Research Complex (J-PARC), which is based in Tokai on the east coast of Japan, at the so-called near detector, which lies 200 m away from the main ring. Researchers expect to have a full neutrino beam sometime in January, with the first results from T2K expected in a year’s time.

Neutrinos are generated at J-PARC by firing high-energy protons at a graphite target. This produces pions, which decay into muons – heavier cousins of the electron – and muon neutrinos. After passing through the near detector, which characterizes the neutrino beam, the muon neutrinos are then sent to the vast SuperKamiokande detector, in Hida, some 300 km north-west from Tokai on Japan’s west coast.

50,000 tonnes of water

Neutrinos interact very weakly with matter, which is why the SuperKamiokande detector consists of 11,146 photomultiplier tubes, each 50 cm in diameter, and 50,000 tonnes of water. The photomultiplier tubes pick up the radiation emitted when a neutrino interacts with a water molecule.

Neutrinos exist in three “flavours” – muon, electron and tau – that oscillate from one to the other as they travel in space. Researchers at J-PARC will be attempting to measure the oscillation from muon neutrino to electron neutrino – the final “mixing angle” yet to be measured, known as theta-13.

J-PARC produced its first muons from the graphite target in September 2007. While it may have also created muon neutrinos, they were not detected because the near detector was still being built and the proton beam not intense enough.

It was extremely satisfying to see the first events in the detector Dave Wark, Imperial College London

Now researchers at J-PARC have ramped up the energy of the proton beam to around 100 kW – enough power to be able to produce a beam of muon neutrinos. “It was extremely satisfying to see the first events in the detector,” says Dave Wark of Imperial College London and international co-spokesperson for T2K.

Although the sake was flowing as physicists celebrated, Wark told physicsworld.com that there is still a lot of work to do such as tuning the beam and increasing the proton intensity to get a larger neutrino flux. “I think we will have a sake or two to celebrate and then send a bottle along to [the CERN particle-physics lab near Geneva] as I hear they are going to need quite a few bottles pretty soon as well,” says Wark.

Scientists at J-PARC will also soon start to commission the on-axis near detector, which will allow researchers to characterize the neutrino beam’s energy distribution and intensity before it is sent to the SuperKamiokande detector. “SuperKamiokande has been set up beautifully and is well ready,” says Wark.

'Galaxy Zoo Mergers' opens today

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One I made earlier (left) and the real thing

By Hamish Johnston

Galaxy Zoo first hit screens in July 2007, then came Galaxy Zoo 2 followed by Galaxy Zoo: The Hunt for Supernovae .

Today trilogy becomes tetralogy with the release of Galaxy Zoo Mergers.

Star Wars meets Wall Street on the silver screen?

No, it’s even more exciting than that — a website that invites ‘citizen scientists’ to help astronomers compare telescope images of colliding galaxies with computer simulations.

A Java application shows you a silhouette of the telescope image along with eight computer simulations. If you think there is a resemblance you click on the simulation and save it for future reference. You can look at another eight and so on.

When your eyes get a bit too bleary, you can start playing with individual saved simulations — adjusting various parameters to try to make the simulation look more like the real thing (see picture above).

The final step is to evaluate how successful you feel you were in reproducing the image.

The fruits of your labour can be logged and fed back to the researchers to help them improve their merger simulations.

The founders of Galaxy Zoo wrote a feature article for us last year, you can read all about the project here.

Happy simulating!

First collisions at the LHC

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ATLAS event

By James Dacey

After all the lunchtime excitement surrounding the first circulation of two proton beams, the scientists at the Large Hadron Collider (LHC) will have enjoyed lavish dinners yesterday after their machine had recorded its first collisions by mid afternoon.

Just after noon (Central European Time), CERN confirmed the acceleration of separate beams of protons in opposing directions around the LHC’s 27 km ring.

Announcing the success via a web broadcast, a bunch of CERN officials suggested that the first low energy collisions would be made within the next two weeks.

However, by the late afternoon the partlcle physics laboratory had issued another public announcement that the beams were made to cross at two places around the ring.

What you can see in this picture is an image produced by the ATLAS detector, which recorded its first candidate for collisions at 14.22 in the afternoon.

“The tracks we are seeing are beautiful,” said LHCb spokesperson Andrei Golutvin, “we’re all ready for serious data taking in a few days’ time”.

Fish inspire wind farm configuration

Conventional wind turbines work best when located as far as possible from the destructive vortices of neighbouring turbines. However, a pair of scientists in the US have worked out that the performance of other kinds of turbine actually improves when they are placed close to one another, concluding that wind farms could therefore be made much smaller than they are today.

The familiar propeller-like turbine with a horizontal axis of rotation can convert 50% or more of the energy from the wind that it is exposed to. In a wind farm, however, the wake from one turbine will disturb the air reaching the blades of its neighbours meaning that turbines must be placed far apart. Typically, to ensure that it generates about 90% of the power that it would in isolation, a turbine must be placed about three rotor diameters from its nearest lateral neighbours and around 10 rotor diameters from the turbine downstream. For a rotor with a diameter of 100 m this latter figure becomes 1 km – a considerable distance.

A less familiar family of turbines have a vertical axis of rotation. It includes a number of different sub-types, including those that use drag to push the device around and others that use aerofoils to generate lift. Individually, these vertical-axis turbines are less efficient than the horizontal-axis devices because only part of the turbine can be pushed by the wind at any one time, and they have therefore proven far less popular. However, these turbines have a significant advantage over the horizontal-axis variety – their power output can be increased when they are placed very close to one another.

How fish save on energy

Now, Robert Whittlesey and John Dabiri of the California Institute of Technology have worked out how best to arrange such closely spaced turbines by drawing on the work of aeronautical engineer Daniel Weihs, who showed in the 1970s how fish save on energy by swimming within schools. Such fish form a series of offset rows, and Weihs found that fish get carried forward by the vortices created by the swimming motion of their two closest companions in the row immediately in front of them. Whittlesey and Dabiri wondered whether the relative spacing of vortices produced by an individual fish might serve as a good template for the arrangement of vertical-axis turbines within a wind farm and set up a computer model to test this idea.

The researchers took wind speed and other measurements from a vertical-axis turbine and then fed these data into the model, in which they analysed various arrangements of virtual turbines to see if any of these would lead to greater average rotation than that that of a free-standing turbine. What they found was that a staggered column of alternately clockwise- and anticlockwise-rotating turbines significantly enhances the speed of turbine rotation. The reason, they say, is that the presence of neighbouring turbines concentrates and accelerates the wind.

More power per unit area

Whittlesey and Dabiri found that vertical-axis turbines arranged in this way could produce a power per unit area 100 times that of existing, horizontal-axis wind farms. Whittlesey points out that this would make wind power more attractive in those countries where there is plenty of wind but limited space such as islands like the UK or Japan, and would also lower infrastructure costs related to connecting up of the turbines, although it is not clear whether the overall cost will be cheaper given the greater number of individual turbines that would be required.

The team have yet to test their theory by measuring the power from different arrangements of actual turbines in a field. He says that they intend to carry out such measurements in the near future.

This research is being presented at the annual meeting of the American Physical Society’s Division of Fluid Dynamics, which is being held in Minneapolis on 22–24 November.

LHC speeds towards collisions

CERN has confirmed the first simultaneous acceleration of two separate proton beams around the Large Hadron Collider (LHC).

Occurring just after noon today (Central European Time), the result marks another important step in the restart of the collider, which was forced to shut down 14 months ago following a catastrophic liquid helium leak.

We are at the end of 20 years of effort from the international scientific community,” says Fabiola Gianotti, the Italian particle physicist in charge of ATLAS, one of the two main detectors at the LHC. “This is the beginning of a fantastic new era of physics, which we hope will change the physics textbooks.”

Swift progress

The news follows the announcement on Friday that CERN had successfully circulated individual proton beams around separate rings of the LHC’s 27 km tunnel.

Further progress followed on Saturday when CERN engineers were able to “capture” the beams using a radio frequency (RF) system, meaning that protons are circulating in coherent bunches rather than spreading out around the ring.

In today’s breakthrough, both beams were powered up at the same time with one being circulated clockwise and the other anticlockwise.

“Thanks to the tireless work of our engineers, we are progressing faster than we could have hoped for on Saturday,” says Archana Sharma, a scientist on the Compact Muon Solenoid (CMS) experiment, the other major detector at the LHC.

Sharma told physicsworld.com that the mood at the particle physics laboratory is one of great optimism but people are saving the real celebrations until the first collision of the beams.

Like a new car

The first low energy collisions at 1.2 TeV per beam are expected within the next two weeks with the beam energy being gradually raised to 3.5 TeV per beam by the beginning of next year.

Rolf-Dieter Heuer, the director general at CERN regards it is a “great achievement” to have made such quick progress, but he is quick to state that the facility will maintain a cautious approach to the LHC’s restart. “I use the analogy of a new car – you would never dream of accelerating a new vehicle to its maximum power upon its first use,” says .

The CERN boss was speaking as part of a live web-broadcast today in which he entertained viewers by acting out the LHC’s antiparallel beamlines through a series of hand gestures.

“We need to get confidence in the machine before we can start to open new windows in physics,” he says.

Simultaneous circulation at the LHC!

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LHC Still on track to rewrite the textbooks

By James Dacey

CERN has confirmed that it is circulating two beams simultaneously around the Large Hadron Collider (LHC).

The advance took place just over one hour ago and was announced at a press conference at the particle physics laboratory in Geneva, Switzerland.

“We are at the end of 20 years of effort from the international scientific community,” said Fabiola Gianotti, the Italian particle physicist in charge of the ATLAS experiment.

“This is the beginning of a fantastic new era of physics, which we hope will change the physics textbooks.”

More to come shortly in physicsworld.com news.

Good luck at the LHC!

By Hamish Johnston

I know I’m not alone in wishing physicists at CERN good luck tonight as they try to get a beam all the way round the Large Hadron Collider — for the first time since the LHC failed spectacularly last year.

“The LHC is a much better understood machine than it was a year ago, and we can look forward with confidence to a smooth transition into physics,” said CERN director general Rolf-Dieter Heuer earlier today.

“By the time you come into work next week, I hope we’ll have beams circulating in the LHC,” he added.

Just what did Galileo believe?

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Galileo returns to the Catholic Church

By James Dacey

Last week I found myself travelling through Rome, when I stumbled across a remider that science and religion are still battling it out in some quarters. A new exhibition at the Basilica of Santa Maria degli Angeli celebrates Galileo Galilei’s unerring faith in the Catholic Church, despite the ongoing debate surrounding this issue.

“According to dominant atheist culture, Galileo pretended to be a believer but he was really a convinced atheist. Galileo was convinced that Divine Providence could not miss nor disregard anything to do with the government of human affairs,” read one of the info boards.

It was in Rome in 1633 that Galileo was forced to stand trial and found “vehemently suspect of heresy”, mainly for his support of the heliocentric view of the universe. By publicly renouncing his opinion, Galileo managed to avoid the death penalty but was forced to spend the rest of his life under house arrest. Despite all of this, by official accounts, Galileo remained a committed Catholic right through to his death in 1642.

Whilst Catholics often refer to Galileo’s unerring faith, many atheists point out that it was very difficult to be anything but Catholic in 17th Century Italy. Their basic argument is that had Galileo not feared for his life, then he would more than likely have been an atheist.

Seeking to debunk this idea, the exhibition in the Basilica presents evidence of Catholic belief from a selection of Galileo’s personal writings. The displays draw from a recent book Galilei, Divine Uomo, written by Antonino Zichichi, Italian nuclear physicist and president of president of the World Federation of Scientists.

One of the displays referred to Galileo’s private reaction to Kepler’s study of the planetary orbits. “Galileo died convinced that Kepler’s discovery of the elliptical orbits of the Sun’s satellites was mistaken. This is the final testimony of his faith that Galileo left to us and to our descendents in the millennia to come”.

Perhaps the translation from Italian into English has added some aggression to writings, such as the greeting board which read, “The aim of this Exhibition is to make everybody understand that science means to decode the logic of He who created the world”.

In fairness, it is not just the outspoken religious camp that has tried to claim one of the great physicists as one of their own. Back in January, arch religion-basher Richard Dawkins was amongst the funders of a campaign to promote atheism through posters on London public transport. One of the posters included the quote of Einstein included is Einstein’s quote: “I do not believe in a personal God and have never denied this but have expressed it clearly”.

So, whilst direct threats of violence have been replaced with rhetoric, it seems that this battle of ideals still wages on.

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